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Molecular basis of gene regulation of diseases – Carsten Daub's research group

We focus on understanding the molecular basis of gene regulation of diseases, specifically related to inflammation. Our work includes genome-wide gene expression analysis from human patient samples employing various RNA-Sequencing. Bioinformatics analysis identifies elements responsible for the observed expression differences in the diseased patients and the associated clinical phenotypes.

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Publications

Selected publications

  • Article: BREAST CANCER RESEARCH. 2020;22(1):6
    Yoosuf N; Navarro JF; Salmen F; Stahl PL; Daub CO
  • Article: BMC GENOMICS. 2018;19(1):181
    Sugiaman-Trapman D; Vitezic M; Jouhilahti E-M; Mathelier A; Lauter G; Misra S; Daub CO; Kere J; Swoboda P
  • Article: PLOS GENETICS. 2017;13(3):e1006641
    Baillie JK; Arner E; Daub C; De Hoon M; Itoh M; Kawaji H; Lassmann T; Carninci P; Forrest ARR; Hayashizaki Y; Consortium F; Faulkner GJ; Wells CA; Rehli M; Pavli P; Summers KM; Hume DA
  • Article: CELL REPORTS. 2016;16(9):2317-2326
    Ryden M; Hrydziuszko O; Mileti E; Raman A; Bornholdt J; Boyd M; Toft E; Qvist V; Naslund E; Thorell A; Andersson DP; Dahlman I; Gao H; Sandelin A; Daub CO; Arner P
  • Article: JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY. 2015;136(3):638-648
    Persson H; Kwon AT; Ramilowski JA; Silberberg G; Soderhall C; Orsmark-Pietras C; Nordlund B; Konradsen JR; de Hoon MJL; Melen E; Hayashizaki Y; Hedlin G; Kere J; Daub CO
  • Article: NUCLEIC ACIDS RESEARCH. 2015;43(14):6787-6798
    Yu NY-L; Hallstrom BM; Fagerberg L; Ponten F; Kawaji H; Carninci P; Forrest ARR; Hayashizaki Y; Uhlen M; Daub CO
  • Article: SCIENCE. 2015;347(6225):1010-1014
    Arner E; Daub CO; Vitting-Seerup K; Andersson R; Lilje B; Drablos F; Lennartsson A; Roennerblad M; Hrydziuszko O; Vitezic M; Freeman TC; Alhendi AMN; Arner P; Axton R; Baillie JK; Beckhouse A; Bodega B; Briggs J; Brombacher F; Davis M; Detmar M; Ehrlund A; Endoh M; Eslami A; Fagiolini M; Fairbairn L; Faulkner GJ; Ferrai C; Fisher ME; Forrester L; Goldowitz D; Guler R; Ha T; Hara M; Herlyn M; Ikawa T; Kai C; Kawamoto H; Khachigian LM; Klinken SP; Kojima S; Koseki H; Klein S; Mejhert N; Miyaguchi K; Mizuno Y; Morimoto M; Morris KJ; Mummery C; Nakachi Y; Ogishima S; Okada-Hatakeyama M; Okazaki Y; Orlando V; Ovchinnikov D; Passier R; Patrikakis M; Pombo A; Qin X-Y; Roy S; Sato H; Savvi S; Saxena A; Schwegmann A; Sugiyama D; Swoboda R; Tanaka H; Tomoiu A; Winteringham LN; Wolvetang E; Yanagi-Mizuochi C; Yoneda M; Zabierowski S; Zhang P; Abugessaisa I; Bertin N; Diehl AD; Fukuda S; Furuno M; Harshbarger J; Hasegawa A; Hori F; Ishikawa-Kato S; Ishizu Y; Itoh M; Kawashima T; Kojima M; Kondo N; Lizio M; Meehan TF; Mungall CJ; Murata M; Nishiyori-Sueki H; Sahin S; Nagao-Sato S; Severin J; de Hoon MJL; Kawai J; Kasukawa T; Lassmann T; Suzuki H; Kawaji H; Summers KM; Wells C; Hume DA; Forrest ARR; Sandelin A; Carninci P; Hayashizaki Y
  • Article: DIABETES. 2012;61(8):1986-1993
    Arner E; Mejhert N; Kulyte A; Balwierz PJ; Pachkov M; Cormont M; Lorente-Cebrian S; Ehrlund A; Laurencikiene J; Heden P; Dahlman-Wright K; Tanti J-F; Hayashizaki Y; Ryden M; Dahlman I; van Nimwegen E; Daub CO; Arner P
Keywords:
Cancer and Oncology Endocrinology and Diabetes Medical Bioinformatics and Systems Biology
Content reviewer:
Carsten Daub
Karin Vikström
04-09-2025