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Jeanette Hellgren Kotaleski group

The main focus of our research is to use mathematical modeling to understand the neural mechanisms underlying information processing, rhythm generation and learning in motor systems. Of specific interest are the basal ganglia, a structure in the brain that is important for the selection and initiation of motor (and cognitive) actions.

Quantitative multi-scale modeling framework for investigation of the basal ganglia

Our research

The levels of investigation using computational models range from simulations of large-scale neural networks, using both biophysically detailed and abstract systems-level models, down to kinetic models of subcellular processes (e.g. dopamine-induced cascades). The latter approach is important for understanding mechanisms involved in e.g. synaptic plasticity and learning.

Besides leading a research group at the Royal Institute of Technology (KTH), Jeanette Hellgren Kotaleski is affiliated with the Department of Neuroscience at ̽»¨¾«Ñ¡. A longstanding collaborative effort between the computational biology group at KTH and the Department of Neuroscience at KI has been ongoing for many years, and the goal is to understand the mechanisms for generating and coordinating activity in the spinal cord of vertebrates. Here the lamprey, an evolutionary old vertebrate, is used as a model system.

Publications

All publications from group members

  • Article: NETWORK NEUROSCIENCE. 2024;8(4):1149-1172
    Carannante I; Scolamiero M; Hjorth JJJ; Kozlov A; Bekkouche B; Guo L; Kumar A; Chacholski W; Kotaleski JH
  • Preprint: BIORXIV. 2023
    Tesler F; Kozlov A; Grillner S; Destexhe A
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(45):e2313058120
    Nylen JF; Kozlov A; Carannante I; Kotaleski JH; Grillner S
  • Article: NATURE COMMUNICATIONS. 2023;14(1):5798
    Zhang Y; He G; Ma L; Liu X; Hjorth JJJ; Kozlov A; He Y; Zhang S; Kotaleski JH; Tian Y; Grillner S; Du K; Huang T
  • Preprint: BIORXIV. 2023
    Carannante I; Scolamiero M; Hjorth JJJ; Kozlov A; Bekkouche B; Guo L; Kumar A; Chachólski W; Kotaleski JH
  • Preprint: 2023
    Kramer A; Milinanni F; Kotaleski JH; Nyquist P; Jauhiainen A; Eriksson O
  • Journal article: CLINICAL NEUROPHYSIOLOGY. 2023;148:e63-e64
    Thompson WS; Hjorth JJJ; Kozlov A; Hellgren-Kotaleski J; Grillner S
  • Review: ELIFE. 2022;11:e69013
    Eriksson O; Bhalla US; Blackwell KT; Crook SM; Keller D; Kramer A; Linne M-L; Saudargiene A; Wade RC; Kotaleski JH
  • Preprint: BIORXIV. 2022
    Zhang Y; He G; Liu X; Hjorth JJJ; Kozlov A; He Y; Zhang S; Ma L; Kotaleski JH; Tian Y; Grillner S; Du K; Huang T
  • Preprint: RESEARCH SQUARE. 2022
    Zhang Y; He G; Liu X; Hjorth JJJ; Kozlov A; He Y; Zhang S; Ma L; Kotaleski J; Tian Y; Grillner S; Du K; Huang T
  • Article: NEUROINFORMATICS. 2021;20(1):241-259
    Santos JPG; Pajo K; Trpevski D; Stepaniuk A; Eriksson O; Nair AG; Keller D; Kotaleski JH; Kramer A
  • Article: NEUROINFORMATICS. 2021;19(4):685-701
    Hjorth JJJ; Kotaleski JH; Kozlov A
  • Review: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021;22(11):5882
    Grillner S; Kozlov A
  • Preprint: BIORXIV. 2021
    Hjorth JJJ; Kotaleski JH; Kozlov A
  • Preprint: BIORXIV. 2020
    Santos JPG; Pajo K; Trpevski D; Stepaniuk A; Eriksson O; Nair AG; Keller D; Kotaleski JH; Kramer A
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2020;117(17):9554-9565
    Hjorth JJJ; Kozlov A; Carannante I; Nylen JF; Lindroos R; Johansson Y; Tokarska A; Dorst MC; Suryanarayana SM; Silberberg G; Kotaleski JH; Grillner S
  • Journal article: AICHE JOURNAL. 2020;66(4)
    Eisenkolb I; Jensch A; Eisenkolb K; Kramer A; Buchholz PCF; Pleiss J; Spiess A; Radde NE
  • Journal article: BIOINFORMATICS. 2019;35(2):284-292
    Eriksson O; Jauhiainen A; Sasane SM; Kramer A; Nair AG; Sartorius C; Kotaleski JH
  • Article: FRONTIERS IN NEURAL CIRCUITS. 2018;12:3
    Lindroos R; Dorst MC; Du K; Filipovic M; Keller D; Ketzef M; Kozlov AK; Kumar A; Lindahl M; Nair AG; Perez-Fernandez J; Grillner S; Silberberg G; Kotaleski JH
  • Journal article: BIOINFORMATICS. 2014;30(20):2991-2992
    Kramer A; Stathopoulos V; Girolami M; Radde N
  • Journal article: BMC BIOINFORMATICS. 2014;15(1):253
    Kramer A; Calderhead B; Radde N
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2014;111(9):3591-3596
    Kozlov AK; Kardamakis AA; Kotaleski JH; Grillner S
  • Journal article: BMC BIOINFORMATICS. 2013;14(Suppl 19):S2
    Vehlow C; Hasenauer J; Kramer A; Raue A; Hug S; Timmer J; Radde N; Theis FJ; Weiskopf D
  • Article: BIOLOGICAL CYBERNETICS. 2013;107(5):497-512
    Sarvestani IK; Kozlov A; Harischandra N; Grillner S; Ekeberg O
  • Conference publication: 2012;:91-98
    Vehlow C; Hasenauer J; Kramer A; Heinrich J; Radde N; Allgöwer F; Weiskopf D
  • Journal article: BIOINFORMATICS. 2012;28(18):i535-i541
    Weber P; Kramer A; Dingler C; Radde N
  • Journal article: FRONTIERS IN NEUROROBOTICS. 2011;5:3
    Harischandra N; Knuesel J; Kozlov A; Bicanski A; Cabelguen J-M; Ijspeert A; Ekeberg O
  • Conference publication: AIP CONFERENCE PROCEEDINGS. 2010;1303(1):68-73
    Kramer A; Radde N; Dubois DM
  • Conference publication: 2010;:493-498
    Kramer A; Hasenauer J; Allgöwer F; Radde N
  • Journal article: PROCEDIA COMPUTER SCIENCE. 2010;1(1):1645-1653
    Kramer A; Radde N
  • Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2009;106(47):20027-20032
    Kozlov A; Huss M; Lansner A; Kotaleski JH; Grillner S
  • Published conference paper: BRAIN RESEARCH REVIEWS. 2008;57(1):2-12
    Grillner S; Wallen P; Saitoh K; Kozlov A; Robertson B
  • Article: BIOLOGICAL CYBERNETICS. 2007;96(2):229-243
    Kozlov AK; Lansner A; Grillner S; Kotaleski JH
  • Review: NEUROSCIENCE FOR ADDICTION MEDICINE: FROM PREVENTION TO REHABILITATION - CONSTRUCTS AND DRUGS. 2007;165:221-234
    Grillner S; Kozlov A; Dario P; Stefanini C; Menciassi A; Lansner A; Kotaleski JH
  • Review: CURRENT OPINION IN NEUROBIOLOGY. 2005;15(5):614-621
    Grillner S; Kozlov A; Kotaleski JH
  • Article: NEUROCOMPUTING. 2003;52-4:65-71
    Kozlov A; Lansner A; Grillner S
  • Article: BIOLOGICAL CYBERNETICS. 2002;86(1):1-14
    Kozlov AK; Ullén F; Fagerstedt P; Aurell E; Lansner A; Grillner S
  • Article: JOURNAL OF COMPUTATIONAL NEUROSCIENCE. 2001;11(2):183-200
    Kozlov A; Kotaleski JH; Aurell E; Grillner S; Lansner A
  • Published conference paper: NEUROCOMPUTING. 2001;38:1373-1378
    Kozlov AK; Fagerstedt P; Ullén F; Aurell E
  • Article: BIOLOGICAL CYBERNETICS. 2001;84(5):323-330
    Kozlov AK; Aurell E; Orlovsky GN; Deliagina TG; Zelenin PV; Hellgren-Kotaleski J; Grillner S
  • Published conference paper: NEUROCOMPUTING. 2000;32:441-446
    Kozlov A; Kotaleski JH; Aurell E; Grillner S; Lansner A
  • Published conference paper: NEUROCOMPUTING. 2000;32:871-877
    Kozlov AK; Aurell E; Orlovsky GN; Deliagina TG; Zelenin PV; Kotaleski JH; Grillner S
  • Article: INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS. 1999;9(12):2271-2277
    Kozlov AK; Sushchik MM; Molkov YI; Kuznetsov AS
  • Article: PHYSICAL REVIEW E - STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS. 1998;58(5):6418-6430
    Rabinovich M; Huerta R; Bazhenov M; Kozlov AK; Abarbanel HDI
  • Article: PHYSICS LETTERS A. 1998;247(1-2):119-128
    Osipov GV; Kozlov AK; Shalfeev VD
  • Article: DOKLADY AKADEMII NAUK. 1997;357(6):752-757
    Kozlov AK; Huerta R; Rabinovich MI; Abarbanel HDI; Bazhenov MV
  • Article: INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS. 1996;6(3):569-580
    Kozlov AK; Shalfeev VD; Chua LO
  • Show more

Selected publications


Gutierrez-Arenas O, Eriksson O, Kotaleski JH
PLoS Comput. Biol. 2014 Jan;10(1):e1003445


Lindahl M, Kamali Sarvestani I, Ekeberg O, Kotaleski JH
Front Comput Neurosci 2013 ;7():76


Nair AG, Gutierrez-Arenas O, Eriksson O, Vincent P, Hellgren Kotaleski J
J. Neurosci. 2015 Oct;35(41):14017-30


Kotaleski JH, Blackwell KT
Nat. Rev. Neurosci. 2010 Apr;11(4):239-51


Kozlov AK, Kardamakis AA, Hellgren Kotaleski J, Grillner S
Proc. Natl. Acad. Sci. U.S.A. 2014 Mar;111(9):3591-6

Keywords:
Bioinformatics (Computational Biology) (Applications at 10610) Computer Sciences Medical Bioinformatics and Systems Biology Neurosciences
Content reviewer:
04-09-2025